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Name Category Organism Program, Pipeline Name or Method Name Source Name
Seriola Dorsalis NCBI Annotation Pipeline Genes Seriola dorsalis (Yellowtail Amberjack) NCBI Gene annotations mapped with Gmap NCBI Gene Annotations View on JBrowse
Seriola rivoliana genome version 1.1, with mitochondrial scaffold (masked) Genome structure Seriola rivoliana (Longfin yellowtail) Hybrid assembly (PE, MP and pacbio) done using MaSuRCA, further scaffolded using Chicago (Dovetail) libraries. ISU Genome Informatics Facility
Seriola rivoliana genome version 1.1, with mitochondrial scaffold (unmasked) Genome structure Seriola rivoliana (Longfin yellowtail) Hybrid assembly (PE, MP and pacbio) done using MaSuRCA, further scaffolded using Chicago (Dovetail) libraries. ISU Genome Informatics Facility
Seriola rivoliana annotation version 1.0 Genes Seriola rivoliana (Longfin yellowtail) BRAKER was used for gene prediction, fucntional annotation using Swissport/uniprot database and Interproscan ISU Genome Informatics Facility
Seriola rivoliana genome version 1.0 Genome structure Seriola rivoliana (Longfin yellowtail) Hybrid assembly (PE, MP and pacbio) done using MaSuRCA, further scaffolded using Chicago (Dovetail) libraries. ISU Genome Informatics Facility
90FISH SNPS INDELS Purcell 2017 Molecular markers (QTL) Seriola dorsalis (Yellowtail Amberjack) bwa mapping, picard, gatk,vcftools,tabix ISU Genome Informatics Facility View on JBrowse
repeatmodeler/masked gene predictions Seriola dorsalis (Yellowtail Amberjack) repeatmodeler,repeatmasker,braker ISU Genome Informatics Facility View on JBrowse
Repeatmasked Genes Seriola dorsalis (Yellowtail Amberjack) opscan,iadhore ISU Genome Informatics Facility View on JBrowse
Seriola dorsalis and seriola dumerili Synteny Related species Seriola dorsalis (Yellowtail Amberjack) opscan,iadhore ISU Genome Informatics Facility View on JBrowse
Genome Assembly Seriola dorsalis (Yellowtail Amberjack) Masurca Seriola dorsalis assembly version 1 in fasta format

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